DNA replication is semi-conservative replication. It involves following steps:
Activation of Nucleotides:
- Nucleotides (dAMP dGMR dCMP and dTMP) present in the nucleoplasm, are activated by ATP in presence of an enzyme phosphorylase.
- This phosphorylation results in the formation of deoxyribonucleotide triphosphates i.e. dATE dGTR dCTP and dTTE
Point of Origin or Initiation point:
- Replication begins at specific point ‘O- Origin and terminates at point ‘T’.
- At the point ‘O’, enzyme endonuclease nicks (breaks the sugar-phosphate backbone or the phosphodiester bond) one of the strands of DNA, temporarily.
Unwinding of DNA molecule:
- Enzyme DNA helices breaks weak hydrogen bonds in the vicinity of ‘O’.
- The strands of DNA separate and unwind. This unwinding is bidirectional.
- SSBP (Single strand binding proteins) remains attached to both the separated strands and prevent them from recoiling (rejoining).
Replicating fork:
- Y-shape replication fork is formed due to unwinding and separation of two strands.
- The unwinding of strands results in strain which is released by super-helix relaxing enzyme.
Synthesis of new strands:
- Each separated strand acts as a template for the synthesis of new complementary strand.
- A small RNA primer (synthesized by activity of enzyme RNA primase) get attached to the 3′ end of template strand and attracts complementary nucleotides from surrounding nucleoplasm.
- These nucleotides bind to the complementary nucleotides on the template strand by hydrogen bonds (i.e. A = T or T = A; G = C or C = G, CEG).
- The phosphodiester bonds are formed between nucleotides of new strand to form a polynucleotide strand.
- The enzyme DNA polymerase catalyses synthesis of new complementary strand always in 5′ – 3′ direction.
Leading and Lagging strand:
- The template strand with free 3′ is called the leading template.
- The template strand with free 5′ end is called the lagging template.
- The replication always starts at C-3 end of template strand and proceeds towards C-5 end.
- New strands are always formed in 5′ → 3′ direction.
- The new strand which develops continuously towards replicating fork is called the leading strand.
- The new strand which develops discontinuously away from the replicating fork is called the lagging strand.
- Maturation of Okazaki fragments : The lagging strand is synthesized in the form of small Okazaki fragments which are joined by enzyme DNA ligase.
- Later RNA primers are removed by the combined action of RNase H, an enzyme that degrades the RNA strand of RNA-DNA hybrids, and polymerase I.
- Gaps formed are filled by complementary DNA sequence with the help of DNA polymerase-I in prokaryotes and DNA polymerase-a in eukaryotes.
- Finally, DNA gyrase (topoisomerase) enzyme forms double helix to form daughter DNA molecules.
Formation of two daughter DNA molecules:
- In each daughter DNA molecule, one strand is parental and the other one is newly synthesized.
- Thus, 50% part (i.e. one strand of the helix) is contributed by mother DNA. Hence, it is described as semiconservative replication.