Question
Explain the process of DNA replication.

Answer

DNA replication is semi-conservative replication. It involves following steps:
Activation of Nucleotides:

  1. Nucleotides (dAMP dGMR dCMP and dTMP) present in the nucleoplasm, are activated by ATP in presence of an enzyme phosphorylase.
  2. This phosphorylation results in the formation of deoxyribonucleotide triphosphates i.e. dATE dGTR dCTP and dTTE

Point of Origin or Initiation point:

  1. Replication begins at specific point ‘O- Origin and terminates at point ‘T’.
  2. At the point ‘O’, enzyme endonuclease nicks (breaks the sugar-phosphate backbone or the phosphodiester bond) one of the strands of DNA, temporarily.

Unwinding of DNA molecule:

  1. Enzyme DNA helices breaks weak hydrogen bonds in the vicinity of ‘O’.
  2. The strands of DNA separate and unwind. This unwinding is bidirectional.
  3. SSBP (Single strand binding proteins) remains attached to both the separated strands and prevent them from recoiling (rejoining).

Replicating fork:

  1. Y-shape replication fork is formed due to unwinding and separation of two strands.
  2. The unwinding of strands results in strain which is released by super-helix relaxing enzyme.

Synthesis of new strands:

  1. Each separated strand acts as a template for the synthesis of new complementary strand.
  2. A small RNA primer (synthesized by activity of enzyme RNA primase) get attached to the 3′ end of template strand and attracts complementary nucleotides from surrounding nucleoplasm.
  3. These nucleotides bind to the complementary nucleotides on the template strand by hydrogen bonds (i.e. A = T or T = A; G = C or C = G, CEG).
  4. The phosphodiester bonds are formed between nucleotides of new strand to form a polynucleotide strand.
  5. The enzyme DNA polymerase catalyses synthesis of new complementary strand always in 5′ – 3′ direction.

Leading and Lagging strand:

  1. The template strand with free 3′ is called the leading template.
  2. The template strand with free 5′ end is called the lagging template.
  3. The replication always starts at C-3 end of template strand and proceeds towards C-5 end.
  4. New strands are always formed in 5′ → 3′ direction.
  5. The new strand which develops continuously towards replicating fork is called the leading strand.
  6. The new strand which develops discontinuously away from the replicating fork is called the lagging strand.
  7. Maturation of Okazaki fragments : The lagging strand is synthesized in the form of small Okazaki fragments which are joined by enzyme DNA ligase.
  8. Later RNA primers are removed by the combined action of RNase H, an enzyme that degrades the RNA strand of RNA-DNA hybrids, and polymerase I.
  9. Gaps formed are filled by complementary DNA sequence with the help of DNA polymerase-I in prokaryotes and DNA polymerase-a in eukaryotes.
  10. Finally, DNA gyrase (topoisomerase) enzyme forms double helix to form daughter DNA molecules.

Formation of two daughter DNA molecules:

  1. In each daughter DNA molecule, one strand is parental and the other one is newly synthesized.
  2. Thus, 50% part (i.e. one strand of the helix) is contributed by mother DNA. Hence, it is described as semiconservative replication.

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